Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797870.1_cds_XP_016457039.1_5037
CDS Infomation

[gene=LOC107780906] [db_xref=GeneID:107780906] [protein=DEAD-box ATP-dependent RNA helicase 1-like] [protein_id=XP_016457039.1] [location=join(25692..25819,27619..27853,28315..28569,29549..29703,30160..30337,31370..31557,32259..32463,33025..33130,33344..33432)] [gbkey=CDS]
Sequence

ATGGAGGAAGAAAAGGAATTGAAGAAAGAGAAGAAAAACATCCCTGTATTGCCATGGATG
AGAAATCCAATTGATATTACTACCTTTGACCAATGCTCTCTCGATTTTGTGCCTTTTCTT
GACCCCAGGTTAGTGGTGGCTTTGAAGAATATGAGCATCACTTCACTCTTTCCTGTGCAA
CTTGCTGTCTGGCAAGAGACAATTGGACCTGGCTCATTTGAACGAGACCTTTGTATAAAT
TCACCTACTGGGAGCGGAAAAACTCTTGCTTATGCGTTACCAATTGTTCAGATGTTGTCT
ACACGTGCTGTAAAATGTCTTCGTGCACTAGTGGTCTTGCCTACCAGAGACCTCGCTTTG
CAGGTCAAAGAGGTTTTCTCTGCTCTTGCACCTGCAGTAGGTTTGTCCGTCGGCTTGGCA
GTTGGTCAGTCATCAATTTCGGATGAAATTTCTGAGCTCATCAAGAAACCTAATGTTGAG
TATGGCATATGTTATGATCCTGAAGAATTCTCATACGAGTTACAAAGTGCAGTAGACATA
TTAGTGGCAACACCTGGAAGACTGATGGACCACATCAGTAACACTGATGGTTTTACCCTT
AAGCATCTATGCTATCTTGTTGTTGATGAAACAGATAGGTTATTAAGGGAAGCTTATCAG
TCCTGGCTGCCTACTGTCATTCAGCTGACCAGCTTTTCTATTGATGGGAACTTCCCTTCT
GCTGATGATCTTCTTCCTTGCAGTTATGGTTCATTGAAGACAATAAGGAGAGTGGGCACA
GAAAGAGGGTTCAAGGGCAAAGCCTATCCAAGGCTTGCAAAGATGGTTTTATCAGCCACA
CTAACACAAGACCCAAGTAAACTTGCTCAGCTTGATTTACATCATCCTCTTCTTTTGACG
ACTGGAGAAAGACGTTACCAGCTGCCTGAAGAACTCAAATCATTTAAAGTGATATGTCAA
TCGAAGCTTAAGCCACTTTATCTAGTTTCCCTTCTTCAAAGTCTGCAAGGGGAGAAATCA
ATTGTTTTCACATCATCTGTGGAGTCCACTCATAGATTATGCACCTTGCTTAAGTTTTTC
GACAATTTGCAAATTGAGTTCAAGGAGTATTCTCGTCTTCAACGTCAATCTGTAAGAAGC
AAGACGTTGAGCGCCTTCAGGGCAGGACAAGTGCAAGTGCTTATTTCCTCTGATGCTATG
ACTCGTGGAATGGATGTTGAAGGAGTTAGAAATGTCGTTAACTATGACATGCCTGCGTAT
ATAAAAACATTTATTCATCGGGCGGGTCGAACTGCAAGAGCAGGCCAAAGTGGGTGTTGC
TTTACTTTATTACGCAAAGACGAGGTTAAGCGGTTCAAGAAGCTGTTACAAAAAGCTGAC
TGTGACTCTTGCCCCACCTATTCTGTTTCTTCTGAAGTTATAGAGTCATTCAACTCTGTG
TATACCTCAGCTTTGGAGAAACTTAGAGAGAATGTTGAATCGGAAAAGTTTCAGAAGAGC
AAGATTAGATTGAAGTCTTCAAATGTCAGAAAGAAGTGA

Peptide Sequence

PEP ID

XP_016457039.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Nicotiana tabacum]
Sequence

MEEEKELKKEKKNIPVLPWMRNPIDITTFDQCSLDFVPFLDPRLVVALKNMSITSLFPVQ
LAVWQETIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRAVKCLRALVVLPTRDLAL
QVKEVFSALAPAVGLSVGLAVGQSSISDEISELIKKPNVEYGICYDPEEFSYELQSAVDI
LVATPGRLMDHISNTDGFTLKHLCYLVVDETDRLLREAYQSWLPTVIQLTSFSIDGNFPS
ADDLLPCSYGSLKTIRRVGTERGFKGKAYPRLAKMVLSATLTQDPSKLAQLDLHHPLLLT
TGERRYQLPEELKSFKVICQSKLKPLYLVSLLQSLQGEKSIVFTSSVESTHRLCTLLKFF
DNLQIEFKEYSRLQRQSVRSKTLSAFRAGQVQVLISSDAMTRGMDVEGVRNVVNYDMPAY
IKTFIHRAGRTARAGQSGCCFTLLRKDEVKRFKKLLQKADCDSCPTYSVSSEVIESFNSV
YTSALEKLRENVESEKFQKSKIRLKSSNVRKK

Transcript Sequence

Gene sequence data has not been registered.